STU 3 Ballot

This page is part of the FHIR Specification (v1.6.0: STU 3 Ballot 4). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

Extension: Protein reference sequence ID

URL for this extension:

http://hl7.org/fhir/StructureDefinition/observation-geneticsProteinReferenceSequenceId

Status: draft. Extension maintained by: Health Level Seven International (Clinical Genomics)

Reference identifier for protein transcript, with version, from NCBI's RefSeq or ENSEMBL. A protein is a sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation (SO:0000104).

Context of Use: Use on element: Observation

usage info: insert a list of places where this extension is used

Summary

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	CodeableConcept	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsProteinReferenceSequenceId Protein reference sequence ID: Reference identifier for protein transcript, with version, from NCBI's RefSeq or ENSEMBL. A protein is a sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation ([SO:0000104](http://www.sequenceontology.org/browser/current_svn/term/SO:0000104)). Use on element: Observation
Documentation for this format

Fulle Structure

Name	Card.	Type	Description & Constraints
extension	0..1	Extension	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsProteinReferenceSequenceId Protein reference sequence ID: Reference identifier for protein transcript, with version, from NCBI's RefSeq or ENSEMBL. A protein is a sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation ([SO:0000104](http://www.sequenceontology.org/browser/current_svn/term/SO:0000104)). Use on element: Observation
extension	0..0
url	1..1	uri	"http://hl7.org/fhir/StructureDefinition/observation-geneticsProteinReferenceSequenceId"
valueCodeableConcept	1..1	CodeableConcept	Value of extension
Documentation for this format

XML Template

<!-- Protein reference sequence ID -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/observation-geneticsProteinReferenceSequenceId" >
  <!-- from Element: extension -->
 <valueCodeableConcept><!-- 1..1 CodeableConcept 
     Value of extension --></valueCodeableConcept>
</extension>

JSON Template

{ // Protein reference sequence ID
  // from Element: extension
    "url" : "http://hl7.org/fhir/StructureDefinition/observation-geneticsProteinReferenceSequenceId", // R! 
    "valueCodeableConcept" : { CodeableConcept } // R! Value of extension
  }

Summary

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	CodeableConcept	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsProteinReferenceSequenceId Protein reference sequence ID: Reference identifier for protein transcript, with version, from NCBI's RefSeq or ENSEMBL. A protein is a sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation ([SO:0000104](http://www.sequenceontology.org/browser/current_svn/term/SO:0000104)). Use on element: Observation
Documentation for this format

Full Structure

Name	Card.	Type	Description & Constraints
extension	0..1	Extension	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsProteinReferenceSequenceId Protein reference sequence ID: Reference identifier for protein transcript, with version, from NCBI's RefSeq or ENSEMBL. A protein is a sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation ([SO:0000104](http://www.sequenceontology.org/browser/current_svn/term/SO:0000104)). Use on element: Observation
extension	0..0
url	1..1	uri	"http://hl7.org/fhir/StructureDefinition/observation-geneticsProteinReferenceSequenceId"
valueCodeableConcept	1..1	CodeableConcept	Value of extension
Documentation for this format

XML Template

<!-- Protein reference sequence ID -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/observation-geneticsProteinReferenceSequenceId" >
  <!-- from Element: extension -->
 <valueCodeableConcept><!-- 1..1 CodeableConcept 
     Value of extension --></valueCodeableConcept>
</extension>

JSON Template

{ // Protein reference sequence ID
  // from Element: extension
    "url" : "http://hl7.org/fhir/StructureDefinition/observation-geneticsProteinReferenceSequenceId", // R! 
    "valueCodeableConcept" : { CodeableConcept } // R! Value of extension
  }

Constraints

ele-1: All FHIR elements must have a @value or children (xpath: @value|f:*|h:div)
ext-1: Must have either extensions or value[x], not both (xpath: exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')]))