Obs-uslab-example2.json

USLab Coded Observation Profile Example: N gonorrhoeae PCR

{
  "resourceType": "Observation",
  "id": "obs-uslab-example2",
  "text": {
    "fhir_comments": [
      "    FHIR build is generating the narratives\n<text>\n\t\t<status value=\"generated\"/>\n\t\t<div xmlns=\"http://www.w3.org/1999/xhtml\">\n\t\t\t<ul>\n\t\t\t\t<li>file: obs-uslab-example2.xml</li>\n\t\t\t\t<li> id: uslab-example2</li>\n\t\t\t\t<li> Name: USLab Observation Example2</li>\n\t\t\t\t<li>Description: USLab Coded Observation Profile Canonical Example: N gonorrhoeae PCR</li>\n\t\t\t</ul>\n\t\t</div>\n\t</text>\n   ",
      "    extenstion for specimen reject goes here - not for this use case\n\t<extension url=\"http://hl7.org/fhir/StructureDefinition/uslab-specimenrejectreason\">\n\t\t<valueCodeableConcept>\n\t\t\t<coding>\n\t\t\t\t<system value=\"http://hl7.org/fhir/v2/0490\"/>\n\t\t\t\t<code value=\"EX\"/>\n\t\t\t\t<display value=\"Expired\"/>\n\t\t\t</coding>\n\t\t</valueCodeableConcept>\n\t</extension>\n   ",
      "    extenstion for observation kind goes here    "
    ],
    "status": "generated",
    "div": "<div><p><b>Generated Narrative with Details</b></p><p><b>id</b>: obs-uslab-example2</p><p><b>identifier</b>: lab test result ID = 2345 (OFFICIAL)</p><p><b>status</b>: final</p><p><b>code</b>: Neisseria gonorrhoeae by PCR <span>(Details : {LOINC code '43305-2' = 'Neisseria gonorrhoeae rRNA [Presence] in Unspecified specimen by Probe and target amplification method', given as 'Neisseria gonorrhoeae rRNA [Presence] in Unspecified specimen by Probe and target amplification method'}; {urn:oid:2.16.840.1.113883.3.72.5.24 code 'GCPCR' = '??', given as 'APTIMA GC'})</span></p><p><b>subject</b>: <a>Todd Lerr</a></p><p><b>effective</b>: 05/12/2014</p><p><b>issued</b>: 06/12/2014 3:42:15 PM</p><p><b>performer</b>: <a>Dr Leonard T Bloodraw Jr</a></p><p><b>value</b>: Positive for Neisseira gonorrheoea rRNA <span>(Details : {SNOMED CT code '10828004' = 'Positive (qualifier value)', given as 'Positive'}; {urn:oid:2.16.840.1.113883.3.72.5.24 code 'POS' = '??', given as 'Positive'})</span></p><p><b>interpretation</b>: Abnormal <span>(Details : {http://hl7.org/fhir/v2/0078 code 'A' = 'Abnormal)</span></p><p><b>specimen</b>: <a>Urine First Void</a></p></div>"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/uslab-observationkind",
      "valueCode": "result"
    }
  ],
  "identifier": [
    {
      "use": "official",
      "type": {
        "text": "lab test result ID"
      },
      "system": "http://lis.acmelabs.org/identifiers/labtestresult",
      "value": "2345"
    }
  ],
  "status": "final",
  "code": {
    "fhir_comments": [
      "   EH :  The local and LOINC test codes go here    "
    ],
    "coding": [
      {
        "fhir_comments": [
          "    EH: LOINC code goes here   ",
          "    EH: LOCAL code goes here   "
        ],
        "system": "http://loinc.org",
        "code": "43305-2",
        "display": "Neisseria gonorrhoeae rRNA [Presence] in Unspecified specimen by Probe and target amplification method"
      },
      {
        "system": "urn:oid:2.16.840.1.113883.3.72.5.24",
        "code": "GCPCR",
        "display": "APTIMA GC"
      }
    ],
    "text": "Neisseria gonorrhoeae by PCR"
  },
  "subject": {
    "reference": "Patient/patient-uslab-example1",
    "display": "Todd Lerr"
  },
  "effectiveDateTime": "2014-12-05",
  "issued": "2014-12-06T15:42:15-08:00",
  "_issued": {
    "fhir_comments": [
      "    EH: Showing dateTime to ss with TZO although only needed to Day    "
    ]
  },
  "performer": [
    {
      "reference": "Practitioner/pract-uslab-example1",
      "display": "Dr Leonard T Bloodraw Jr"
    }
  ],
  "valueCodeableConcept": {
    "fhir_comments": [
      "   EH :  The local and SNOMED Result codes go here    "
    ],
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "10828004",
        "display": "Positive"
      },
      {
        "system": "urn:oid:2.16.840.1.113883.3.72.5.24",
        "code": "POS",
        "display": "Positive"
      }
    ],
    "text": "Positive for Neisseira gonorrheoea rRNA"
  },
  "interpretation": {
    "fhir_comments": [
      "     eH dataabsent reason  would go here if valueQuantity was empty e.g.:\n\t<dataAbsentReason value=\"error\"</dataAbsentReason>    "
    ],
    "coding": [
      {
        "system": "http://hl7.org/fhir/v2/0078",
        "code": "A"
      }
    ]
  },
  "specimen": {
    "reference": "Specimen/spec-uslab-example2",
    "display": "Urine First Void"
  }
}