Specimen-example-isolate.xml

Bacterial Isolate from Stool sample (id = "isolate")

<Specimen xmlns="http://hl7.org/fhir">
  <id value="isolate"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml">
      <p>
        <b>Generated Narrative with Details</b>
      </p>
      <p>
        <b>id</b>: isolate</p>
      <p>
        <b>contained</b>: </p>
      <p>
        <b>status</b>: available</p>
      <p>
        <b>type</b>: Bacterial isolate specimen <span>(Details : {SNOMED CT code '429951000124103' = '429951000124103', given as 'Bacterial
           isolate specimen'})</span>
      </p>
      <p>
        <b>parent</b>: id: stool; status: unavailable; Stool specimen <span>(Details : {SNOMED CT code '119339001' = '119339001', given as 'Stool specimen'})</span>; Patient/example; X352356; receivedTime: Aug 16, 2015 7:03:00 AM</p>
      <p>
        <b>subject</b>: <a>Patient/example</a>
      </p>
      <p>
        <b>accessionIdentifier</b>: X352356-ISO1</p>
      <p>
        <b>receivedTime</b>: Aug 18, 2015 7:03:00 AM</p>
      <h3>Collections</h3>
      <table>
        <tr>
          <td>-</td>
          <td>
            <b>Collector</b>
          </td>
          <td>
            <b>Collected[x]</b>
          </td>
          <td>
            <b>Method</b>
          </td>
        </tr>
        <tr>
          <td>*</td>
          <td>
            <a>Practitioner/f202</a>
          </td>
          <td>Aug 16, 2015 7:03:00 AM</td>
          <td>Plates, Blood Agar <span>(Details : {http://hl7.org/fhir/v2/0488 code 'BAP' = 'Plates, Blood Agar)</span>
          </td>
        </tr>
      </table>
    </div>
  </text>
  <contained>
    <Specimen>
      <id value="stool"/>
      <accessionIdentifier>
        <!--   accession identifier - e.g. assigned by the labaratory when it is received.
     This is common, unlike specimen identifier   -->
        <system value="http://lab.acme.org/specimens/2015"/>
        <value value="X352356"/>
      </accessionIdentifier>
      <status value="unavailable"/>
      <type>
        <!--  
   Type is a loosely defined field because there is such a lot of variation in how it
         is used.
   The principal variation is how much information that could be represented elsewhere
         is also
   represented here. For instance, here's some possible types:
     lithium heparin plasma   (+ .container.additive) (e.g. SNOMED CT 446272009)
     transfusion bag of blood (+ container.type)
     Peritoneal lavage        (+ collection.bodySite)
   If the type includes other fields, it would be normal not to populate the other fields

   Note that this practice is so widespread that it's pointless to try and stop it 
  -->
        <coding>
          <system value="http://snomed.info/sct"/>
          <code value="119339001"/>
          <display value="Stool specimen"/>
        </coding>
      </type>
      <subject>
        <reference value="Patient/example"/>
      </subject>
      <receivedTime value="2015-08-16T07:03:00Z"/>
      <collection>
        <collector>
          <!--     in practice, collecter is almost always recorded     -->
          <display value="Patient"/>
        </collector>
        <comment value="Patient dropped off specimen"/>
        <!--     the time of collection is usually required. Usually a point in time, but can be a
         period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)     -->
        <collectedDateTime value="2011-08-16T06:15:00Z"/>
        <!--     method is usually implied by type     -->
        <method>
          <coding>
            <system value="http://hl7.org/fhir/v2/0488"/>
            <code value="LNV"/>
          </coding>
        </method>
      </collection>
    </Specimen>
  </contained>
  <accessionIdentifier>
    <system value="http://lab.acme.org/specimens/2011"/>
    <value value="X352356-ISO1"/>
  </accessionIdentifier>
  <status value="available"/>
  <type>
    <coding>
      <system value="http://snomed.info/sct"/>
      <code value="429951000124103"/>
      <display value="Bacterial isolate specimen"/>
    </coding>
  </type>
  <subject>
    <reference value="Patient/example"/>
  </subject>
  <receivedTime value="2015-08-18T07:03:00Z"/>
  <parent>
    <reference value="#stool"/>
  </parent>
  <collection>
    <collector>
      <!--     in practice, collecter is almost always recorded     -->
      <reference value="Practitioner/f202"/>
    </collector>
    <!--     the time of collection is usually required. Usually a point in time, but can be a
     period 
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)     -->
    <collectedDateTime value="2015-08-16T07:03:00Z"/>
    <!--     method is usually implied by type     -->
    <method>
      <coding>
        <system value="http://hl7.org/fhir/v2/0488"/>
        <code value="BAP"/>
      </coding>
    </method>
  </collection>
</Specimen>