Spec-uslab-example1.json

USLab Specimen Profile Canonical Example: Blood

{
  "resourceType": "Specimen",
  "id": "spec-uslab-example1",
  "text": {
    "status": "generated",
    "div": "<div><p><b>Generated Narrative with Details</b></p><p><b>id</b>: spec-uslab-example1</p><p><b>identifier</b>: SID123 (OFFICIAL)</p><p><b>accessionIdentifier</b>: 21041205000001 (OFFICIAL)</p><p><b>type</b>: Blood sample <span>(Details : {SNOMED CT code '122555007' = 'Venous blood specimen (specimen)', given as 'Venous blood specimen'}; {http://ehr.goodhealthclinic.org code 'BLD' = '??', given as 'Blood'})</span></p><p><b>subject</b>: <a>Todd Lerr</a></p><h3>Collections</h3><table><tr><td>-</td><td><b>Collected[x]</b></td><td><b>BodySite</b></td></tr><tr><td>*</td><td>05/12/2014</td><td>Drawn from Arm <span>(Details : {SNOMED CT code '53120007' = 'Upper limb structure (body structure)', given as 'Arm'}; {http://ehr.goodhealthclinic.org code 'ARM' = '??', given as 'Arm'})</span></td></tr></table></div>"
  },
  "identifier": [
    {
      "fhir_comments": [
        "  Filler ID moved to accsession number\n\t<identifier>\n\t\t<use value=\"official\"></use>\n\t\t<label  value=\"Filler Specimen ID\"></label>\n\t\t<system value=\"http://lis.acmelabs.org/identifiers/specimen\"/>\n\t\t<value value=\"SID456\"/>\n\t</identifier>\n  "
      ],
      "use": "official",
      "_use": {
        "fhir_comments": [
          "   a specimen identifier - e.g. assigned when the specimen was taken by the orderer/placer  use the accession number for the filling lab   ",
          "  Placer ID  "
        ]
      },
      "system": "http://ehr.goodhealthclinic.org/identifiers/specimen",
      "value": "SID123"
    }
  ],
  "accessionIdentifier": {
    "use": "official",
    "_use": {
      "fhir_comments": [
        "   accession identifier - e.g. assigned by the labaratory when it is received.\n     This is common, unlike specimen identifier   "
      ]
    },
    "system": "http://lis.acmelabs.org/identifiers/accession",
    "value": "21041205000001"
  },
  "type": {
    "coding": [
      {
        "fhir_comments": [
          "  \n   Type is a loosely defined field because there is such a lot of variation in how it is used.\n   The principal variation is how much information that could be represented elsewhere is also\n   represented here. For instance, here's some possible types:\n     lithium heparin plasma   (+ .container.additive) (e.g. SNOMED CT 446272009)\n     transfusion bag of blood (+ container.type)\n     Peritoneal lavage        (+ collection.bodySite)\n   If the type includes other fields, it would be normal not to populate the other fields\n\n   Note that this practice is so widespread that it's pointless to try and stop it  :(   ",
          "  choice of SNOMED CT concept code...  "
        ],
        "system": "http://snomed.info/sct",
        "code": "122555007",
        "_code": {
          "fhir_comments": [
            "  EH: Note to balloters  - lots of choices for whole blood I chose this.  "
          ]
        },
        "display": "Venous blood specimen"
      },
      {
        "fhir_comments": [
          "   and or local code  "
        ],
        "system": "http://ehr.goodhealthclinic.org",
        "code": "BLD",
        "display": "Blood"
      }
    ],
    "text": "Blood sample"
  },
  "subject": {
    "reference": "Patient/patient-uslab-example1",
    "_reference": {
      "fhir_comments": [
        "  Patient is required from core   "
      ]
    },
    "display": "Todd Lerr"
  },
  "collection": {
    "collectedDateTime": "2014-12-05",
    "_collectedDateTime": {
      "fhir_comments": [
        "   the time of collection is required. Usually a point in time, but can be a period\n      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)   "
      ]
    },
    "bodySite": {
      "coding": [
        {
          "fhir_comments": [
            "  choice of SNOMED CT concept code...  "
          ],
          "system": "http://snomed.info/sct",
          "code": "53120007",
          "_code": {
            "fhir_comments": [
              "  EH: Note to balloters  -  this is to demonstrate use of source for body site not really needed for blood draw.  "
            ]
          },
          "display": "Arm"
        },
        {
          "fhir_comments": [
            "   and or local code  "
          ],
          "system": "http://ehr.goodhealthclinic.org",
          "code": "ARM",
          "display": "Arm"
        }
      ],
      "text": "Drawn from Arm"
    }
  }
}