Sequence-example.xml

Example of sequence (id = "example")

<Sequence xmlns="http://hl7.org/fhir">
    <id value="example"/>
    <text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example</p><p><b>type</b>: DNA</p><p><b>patient</b>: <a>Patient/example</a></p><p><b>species</b>: Homo sapiens <span>(Details : {SNOMED CT code '337915000' = 'Homo sapiens (organism))</span></p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>?? <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NC_000007.14' = '??)</span></td><td>55227970</td><td>55227980</td></tr></table><h3>Variations</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td></tr><tr><td>*</td><td>55227976</td><td>55227977</td><td>T</td><td>A</td></tr></table><h3>Repositories</h3><table><tr><td>-</td><td><b>Url</b></td><td><b>Name</b></td><td><b>VariantId</b></td></tr><tr><td>*</td><td><a>https://www.googleapis.com/genomics/v1beta2</a></td><td>ga4gh</td><td>A1A2</td></tr></table></div></text><type value="DNA"/>
    <patient>
        <reference value="Patient/example"/>
    </patient>
    <species>
        <coding>
            <system value="http://snomed.info/sct"/>
            <code value="337915000"/>
        </coding>
        <text value="Homo sapiens"/>
    </species>
    <referenceSeq>
        <referenceSeqId>
          <coding>
            <system value="http://www.ncbi.nlm.nih.gov/nuccore"/>
            <code value="NC_000007.14"/>
          </coding>
        </referenceSeqId>
        <windowStart value="55227970"/>
        <windowEnd value="55227980"/>
    </referenceSeq>
    <variation>
        <start value="55227976"/>
        <end value="55227977"/>
        <observedAllele value="T"/>
        <referenceAllele value="A"/>
    </variation>
    <repository>
        <url value="https://www.googleapis.com/genomics/v1beta2"/>
        <name value="ga4gh"/>
        <variantId value="A1A2"/>
    </repository>
</Sequence>