Sequence-example.json

Example of sequence

{
  "resourceType": "Sequence",
  "id": "example",
  "text": {
    "status": "generated",
    "div": "<div><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example</p><p><b>type</b>: DNA</p><p><b>patient</b>: <a>Patient/example</a></p><p><b>species</b>: Homo sapiens <span>(Details : {SNOMED CT code '337915000' = 'Homo sapiens (organism))</span></p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>?? <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NC_000007.14' = '??)</span></td><td>55227970</td><td>55227980</td></tr></table><h3>Variations</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td></tr><tr><td>*</td><td>55227976</td><td>55227977</td><td>T</td><td>A</td></tr></table><h3>Repositories</h3><table><tr><td>-</td><td><b>Url</b></td><td><b>Name</b></td><td><b>VariantId</b></td></tr><tr><td>*</td><td><a>https://www.googleapis.com/genomics/v1beta2</a></td><td>ga4gh</td><td>A1A2</td></tr></table></div>"
  },
  "type": "DNA",
  "patient": {
    "reference": "Patient/example"
  },
  "species": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "337915000"
      }
    ],
    "text": "Homo sapiens"
  },
  "referenceSeq": [
    {
      "referenceSeqId": {
        "coding": [
          {
            "system": "http://www.ncbi.nlm.nih.gov/nuccore",
            "code": "NC_000007.14"
          }
        ]
      },
      "windowStart": 55227970,
      "windowEnd": 55227980
    }
  ],
  "variation": {
    "start": 55227976,
    "end": 55227977,
    "observedAllele": "T",
    "referenceAllele": "A"
  },
  "repository": [
    {
      "url": "https://www.googleapis.com/genomics/v1beta2",
      "name": "ga4gh",
      "variantId": "A1A2"
    }
  ]
}