Observation-example-genetics-1.ttl

Genetics example 1

@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/owl#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/sct/> .
@prefix xs: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir//Observation/example-observation-genetics-1> a fhir:Observation;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-observation-genetics-1"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ]
  ];
  fhir:DomainResource.extension [
     fhir:index 0;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsDNASequenceVariation" ];
     fhir:Extension.valueString [ fhir:value "NG_007726.3:g.146252T>G" ]
  ];
  fhir:DomainResource.extension [
     fhir:index 1;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ];
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://www.genenames.org" ];
         fhir:Coding.code [ fhir:value "3236" ];
         fhir:Coding.display [ fhir:value "EGFR" ]       ]     ]
  ];
  fhir:DomainResource.extension [
     fhir:index 2;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsDNARegionName" ];
     fhir:Extension.valueString [ fhir:value "Exon 21" ]
  ];
  fhir:DomainResource.extension [
     fhir:index 3;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass" ];
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://hl7.org/fhir/LOINC-48002-0-answerlist" ];
         fhir:Coding.code [ fhir:value "LA6684-0" ];
         fhir:Coding.display [ fhir:value "somatic" ]       ]     ]
  ];
  fhir:Observation.status [ fhir:value "final"];
  fhir:Observation.code [
     a loinc:55233-1;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a loinc:55233-1;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "55233-1" ];
       fhir:Coding.display [ fhir:value "Genetic analysis master panel" ]     ]
  ];
  fhir:Observation.subjectReference [
     fhir:reference <http://hl7.org/fhir/Patient/example-genetics-somatic>;
     fhir:Reference.reference [ fhir:value "Patient/example-genetics-somatic" ];
     fhir:Reference.display [ fhir:value "Molecular Lab Patient ID: HOSP-23456" ]
  ];
  fhir:Observation.issued [ fhir:value "2013-04-03T15:30:10+01:00"^^xs:dateTime];
  fhir:Observation.performerReference [
     fhir:index 0;
     fhir:reference <http://hl7.org/fhir/Practitioner/example-genetics-somatic>;
     fhir:Reference.reference [ fhir:value "Practitioner/example-genetics-somatic" ];
     fhir:Reference.display [ fhir:value "Molecular Diagnostics Laboratory" ]
  ];
  fhir:Observation.valueCodeableConcept [
     a sct:10828004;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a sct:10828004;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
       fhir:Coding.code [ fhir:value "10828004" ];
       fhir:Coding.display [ fhir:value "Positive" ]     ]
  ];
  fhir:Observation.specimen [
     fhir:reference <http://hl7.org/fhir/Specimen/genetics-example1-somatic>;
     fhir:Reference.reference [ fhir:value "Specimen/genetics-example1-somatic" ];
     fhir:Reference.display [ fhir:value "Molecular Specimen ID: MLD45-Z4-1234" ]
  ].

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