Spec-uslab-example1.xml

USLab Specimen Profile Canonical Example: Blood (id = "spec-uslab-example1")

<Specimen xmlns="http://hl7.org/fhir">
  <id value="spec-uslab-example1"/>

  <!--    a specimen identifier - e.g. assigned when the specimen was taken by the orderer/placer
    use the accession number for the filling lab    -->
  <!--   Placer ID   -->
  <text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: spec-uslab-example1</p><p><b>identifier</b>: SID123 (OFFICIAL)</p><p><b>type</b>: Blood sample <span>(Details : {SNOMED CT code '122555007' = '122555007', given as 'Venous blood specimen'};
           {http://ehr.goodhealthclinic.org code 'BLD' = '??', given as 'Blood'})</span></p><p><b>subject</b>: <a>Todd Lerr</a></p><p><b>accessionIdentifier</b>: 21041205000001 (OFFICIAL)</p><h3>Collections</h3><table><tr><td>-</td><td><b>Collected[x]</b></td><td><b>BodySite</b></td></tr><tr><td>*</td><td>05/12/2014</td><td>Drawn from Arm <span>(Details : {SNOMED CT code '53120007' = '53120007', given as 'Arm'}; {http://ehr.goodhealthclinic.or
              g code 'ARM' = '??', given as 'Arm'})</span></td></tr></table></div></text><identifier>
    <use value="official"/>
    <system value="http://ehr.goodhealthclinic.org/identifiers/specimen"/>
    <value value="SID123"/>
  </identifier>
  <!--   Filler ID moved to accsession number
  <identifier>
    <use value="official"></use>
    <label  value="Filler Specimen ID"></label>
    <system value="http://lis.acmelabs.org/identifiers/specimen"/>
    <value value="SID456"/>
  </identifier>
   -->
  <!--   
   Type is a loosely defined field because there is such a lot of variation in how it
   is used.
   The principal variation is how much information that could be represented elsewhere
   is also
   represented here. For instance, here's some possible types:
     lithium heparin plasma   (+ .container.additive) (e.g. SNOMED CT 446272009)
     transfusion bag of blood (+ container.type)
     Peritoneal lavage        (+ collection.bodySite)
   If the type includes other fields, it would be normal not to populate the other fields

   Note that this practice is so widespread that it's pointless to try and stop it  :(
      -->
  <!--   choice of SNOMED CT concept code...   -->
  <type>
    <coding>
      <system value="http://snomed.info/sct"/>
      <!--   EH: Note to balloters  - lots of choices for whole blood I chose this.   -->
      <code value="122555007"/>
      <display value="Venous blood specimen"/>
    </coding>
    <!--    and or local code   -->
    <coding>
      <system value="http://ehr.goodhealthclinic.org"/>
      <code value="BLD"/>
      <display value="Blood"/>
    </coding>
    <text value="Blood sample"/>
  </type>
  <!--   Patient is required from core    -->
  <subject>
    <reference value="Patient/patient-uslab-example1"/>
    <display value="Todd Lerr"/>
  </subject>
  <!--    accession identifier - e.g. assigned by the labaratory when it is received.
     This is common, unlike specimen identifier    -->
  <accessionIdentifier>
    <use value="official"/>
    <system value="http://lis.acmelabs.org/identifiers/accession"/>
    <value value="21041205000001"/>
  </accessionIdentifier>
  <collection>
    <!--    the time of collection is required. Usually a point in time, but can be a period
      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)    -->
    <collectedDateTime value="2014-12-05"/>
    <bodySite>
      <!--   choice of SNOMED CT concept code...   -->
      <coding>
        <system value="http://snomed.info/sct"/>
        <!--   EH: Note to balloters  -  this is to demonstrate use of source for body site not really
         needed for blood draw.   -->
        <code value="53120007"/>
        <display value="Arm"/>
      </coding>
      <!--    and or local code   -->
      <coding>
        <system value="http://ehr.goodhealthclinic.org"/>
        <code value="ARM"/>
        <display value="Arm"/>
      </coding>
      <text value="Drawn from Arm"/>
    </bodySite>
  </collection>
</Specimen>