Connectathon 11 Snapshot

This page is part of the FHIR Specification (v1.2.0: STU 3 Draft). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

Observation-consensus-sequence-block-example-2.xml

Raw XML (canonical form)

Example of HLA genotyping results - consensus sequence block 2 (id = "consensus-sequence-block-example-2")

<Observation xmlns="http://hl7.org/fhir">
  <id value="consensus-sequence-block-example-2"/>
  <text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: consensus-sequence-block-example-2</p><p><b>status</b>: final</p><p><b>code</b>: HLA-A [Type] <span>(Details : {LOINC code '13298-5' = 'HLA-A [Type])</span></p><p><b>value</b>: TTCCTGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTTTCCAGAGAAGCCAA TCAGTGTCGTCGCGGTCGCTGTTCTAAAG
        TCCGCACGCACCCACCGGGACTCAGATTCTCCCCAGACG CCGAGGATGGCCGTCATGGCGCCCCGAACCCTCGTCCTGCTACTCTCGGGGGCCCTGGCCC
        TGACCCA GACCTGGGCAGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGCGGGGAGAAGCAAGGGGCCCGCCT GGCGGGGGCGCAAGACCCGGGAAG
        CCGCGCCGGGAGGAGGGTCGGGCGGGTCTCAGCCACTCCTCGTC CCCAGGCTCCCACTCCATGAGGTATTTCTCCACATCCGTGTCCCGGCCCGGCCGCG
        GGGAGCCCCGCT TCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGG ATGGAGCCGCGGGCGCCGT
        GGATAGAGCAGGAGGGGCCGGAGTATTGGGACGAGGAGACAGGGAAAGT GAAGGCCCACTCACAGACTGACCGAGAGAACCTGCGGATCGCGCTCCGCTA
        CTACAACCAGAGCGAGG CCGGTGAGTGACCCCGGCCCGGGGCGCAGGTCACGACCCCTCATCCCCCACGGACGGGCCGGGTCGCC
         CACAGTCTCCGGGTCCGAGATCCACCCCGAAGCCGCGGGACCCCGAGACCCTTGCCCCGGGAGAGGCC CAGGCGCCTTAACCCGGTTTCATTTTCAGTT
        TAGGCCAAAAATCCCCCCGGGTTGGTCGGGGCCGGGC GGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCCTCCAGATGATG
        TTTGG CTGCGACGTGGGGTCGGACGGGCGCTTCCTCCGCGGGTACCACCAGTACGCCTACGACGGCAAGGATT ACATCGCCCTGAAAGAGGACCTGCGC
        TCTTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGC AAGTGGGAGGCGGCCCATGTGGCGGAGCAGCAGAGAGCCTACCTGGAGGGCACGTGCG
        TGGACGGGCT CCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGGGTACCAGGGGCCACGGGGCGCCTA CCTGATCGCCTGTAGGTCTCC
        CGGGCTGGCCTCCCACAAGGAGGGGAGACAATTGGGACCAACACTAG AATATCGCCCTCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTCCAGAT
        CCTGTACCAGAGAGT GACTCTGAGGTTCCGCCCTGCTCTCTGACACAATTAAGGGATAAAATCTCTGACGGAATGACGGAAAG ACGATCCCTCGAATAC
        TGATGACTGGTTCCCTTTGACACCGGCAGCAGCCTTGGGACCGTGACTTTTC CTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTGTGGGGGTCTG
        AGTCCAGCACTTCTGAGTCC CTCAGCCTCCACTCAGGTCAGGACCAGAAGTCGCTGTTCCCTCCTCAGGGAATAGAAGATTATCCCAG
         GTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCTCTTCCCCATCCCGGGTGTCCTGTCCATTCT CAAGATGGCCACATGCATGCTGGTGGAGTGT
        CCCATGACAGATGCAAAATGCCTGAATTTTCTGACTC</p></div></text><extension url="http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockReferenceSeq">
      <valueCodeableConcept>
          <coding>
              <system value="http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/"/>
              <code value="ref1"/>
          </coding>
      </valueCodeableConcept>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockStart">
      <valueInteger value="29942412"/>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockEnd">
      <valueInteger value="29945809"/>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockPhaseSet">
      <valueInteger value="2"/>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockExpectedCopyNumber">
      <valueInteger value="1"/>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockContinuity">
      <valueBoolean value="true"/>
  </extension>
  
  <status value="final"/>
  <code>
      <coding>
          <system value="http://loinc.org"/>
          <code value="13298-5"/>
      </coding>
  </code>
  <valueString value="TTCCTGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTTTCCAGAGAAGCCAA TCAGTGTCGTCGCGGTCGCTGTTCTAAAGTC
  CGCACGCACCCACCGGGACTCAGATTCTCCCCAGACG CCGAGGATGGCCGTCATGGCGCCCCGAACCCTCGTCCTGCTACTCTCGGGGGCCCTGGCCCTG
  ACCCA GACCTGGGCAGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGCGGGGAGAAGCAAGGGGCCCGCCT GGCGGGGGCGCAAGACCCGGGAAGCC
  GCGCCGGGAGGAGGGTCGGGCGGGTCTCAGCCACTCCTCGTC CCCAGGCTCCCACTCCATGAGGTATTTCTCCACATCCGTGTCCCGGCCCGGCCGCGGG
  GAGCCCCGCT TCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGG ATGGAGCCGCGGGCGCCGTGG
  ATAGAGCAGGAGGGGCCGGAGTATTGGGACGAGGAGACAGGGAAAGT GAAGGCCCACTCACAGACTGACCGAGAGAACCTGCGGATCGCGCTCCGCTACT
  ACAACCAGAGCGAGG CCGGTGAGTGACCCCGGCCCGGGGCGCAGGTCACGACCCCTCATCCCCCACGGACGGGCCGGGTCGCC CACAGTCTCCGGGTCC
  GAGATCCACCCCGAAGCCGCGGGACCCCGAGACCCTTGCCCCGGGAGAGGCC CAGGCGCCTTAACCCGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCC
  CGGGTTGGTCGGGGCCGGGC GGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCCTCCAGATGATGTTTGG
   CTGCGACGTGGGGTCGGACGGGCGCTTCCTCCGCGGGTACCACCAGTACGCCTACGACGGCAAGGATT ACATCGCCCTGAAAGAGGACCTGCGCTCTTG
  GACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGC AAGTGGGAGGCGGCCCATGTGGCGGAGCAGCAGAGAGCCTACCTGGAGGGCACGTGCGTGGAC
  GGGCT CCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGGGTACCAGGGGCCACGGGGCGCCTA CCTGATCGCCTGTAGGTCTCCCGGGC
  TGGCCTCCCACAAGGAGGGGAGACAATTGGGACCAACACTAG AATATCGCCCTCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTCCAGATCCTGT
  ACCAGAGAGT GACTCTGAGGTTCCGCCCTGCTCTCTGACACAATTAAGGGATAAAATCTCTGACGGAATGACGGAAAG ACGATCCCTCGAATACTGATG
  ACTGGTTCCCTTTGACACCGGCAGCAGCCTTGGGACCGTGACTTTTC CTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTGTGGGGGTCTGAGTCC
  AGCACTTCTGAGTCC CTCAGCCTCCACTCAGGTCAGGACCAGAAGTCGCTGTTCCCTCCTCAGGGAATAGAAGATTATCCCAG GTGCCTGTGTCCAGGC
  TGGTGTCTGGGTTCTGTGCTCTCTTCCCCATCCCGGGTGTCCTGTCCATTCT CAAGATGGCCACATGCATGCTGGTGGAGTGTCCCATGACAGATGCAAA
  ATGCCTGAATTTTCTGACTC"/>

</Observation>

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.