Observation-consensus-sequence-block-example-2.json

Example of HLA genotyping results - consensus sequence block 2

{
  "resourceType": "Observation",
  "id": "consensus-sequence-block-example-2",
  "text": {
    "status": "generated",
    "div": "<div><p><b>Generated Narrative with Details</b></p><p><b>id</b>: consensus-sequence-block-example-2</p><p><b>status</b>: final</p><p><b>code</b>: HLA-A [Type] <span>(Details : {LOINC code '13298-5' = 'HLA-A [Type])</span></p><p><b>value</b>: TTCCTGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTTTCCAGAGAAGCCAA TCAGTGTCGTCGCGGTCGCTGTTCTAAAGTCCGCACGCACCCACCGGGACTCAGATTCTCCCCAGACG CCGAGGATGGCCGTCATGGCGCCCCGAACCCTCGTCCTGCTACTCTCGGGGGCCCTGGCCCTGACCCA GACCTGGGCAGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGCGGGGAGAAGCAAGGGGCCCGCCT GGCGGGGGCGCAAGACCCGGGAAGCCGCGCCGGGAGGAGGGTCGGGCGGGTCTCAGCCACTCCTCGTC CCCAGGCTCCCACTCCATGAGGTATTTCTCCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCT TCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGG ATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACGAGGAGACAGGGAAAGT GAAGGCCCACTCACAGACTGACCGAGAGAACCTGCGGATCGCGCTCCGCTACTACAACCAGAGCGAGG CCGGTGAGTGACCCCGGCCCGGGGCGCAGGTCACGACCCCTCATCCCCCACGGACGGGCCGGGTCGCC CACAGTCTCCGGGTCCGAGATCCACCCCGAAGCCGCGGGACCCCGAGACCCTTGCCCCGGGAGAGGCC CAGGCGCCTTAACCCGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCCCGGGTTGGTCGGGGCCGGGC GGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCCTCCAGATGATGTTTGG CTGCGACGTGGGGTCGGACGGGCGCTTCCTCCGCGGGTACCACCAGTACGCCTACGACGGCAAGGATT ACATCGCCCTGAAAGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGC AAGTGGGAGGCGGCCCATGTGGCGGAGCAGCAGAGAGCCTACCTGGAGGGCACGTGCGTGGACGGGCT CCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGGGTACCAGGGGCCACGGGGCGCCTA CCTGATCGCCTGTAGGTCTCCCGGGCTGGCCTCCCACAAGGAGGGGAGACAATTGGGACCAACACTAG AATATCGCCCTCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTCCAGATCCTGTACCAGAGAGT GACTCTGAGGTTCCGCCCTGCTCTCTGACACAATTAAGGGATAAAATCTCTGACGGAATGACGGAAAG ACGATCCCTCGAATACTGATGACTGGTTCCCTTTGACACCGGCAGCAGCCTTGGGACCGTGACTTTTC CTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTGTGGGGGTCTGAGTCCAGCACTTCTGAGTCC CTCAGCCTCCACTCAGGTCAGGACCAGAAGTCGCTGTTCCCTCCTCAGGGAATAGAAGATTATCCCAG GTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCTCTTCCCCATCCCGGGTGTCCTGTCCATTCT CAAGATGGCCACATGCATGCTGGTGGAGTGTCCCATGACAGATGCAAAATGCCTGAATTTTCTGACTC</p></div>"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockReferenceSeq",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/",
            "code": "ref1"
          }
        ]
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockStart",
      "valueInteger": 29942412
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockEnd",
      "valueInteger": 29945809
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockPhaseSet",
      "valueInteger": 2
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockExpectedCopyNumber",
      "valueInteger": 1
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-consensus-sequence-blockContinuity",
      "valueBoolean": true
    }
  ],
  "status": "final",
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "13298-5"
      }
    ]
  },
  "valueString": "TTCCTGGATACTCACGACGCGGACCCAGTTCTCACTCCCATTGGGTGTCGGGTTTCCAGAGAAGCCAA TCAGTGTCGTCGCGGTCGCTGTTCTAAAGTCCGCACGCACCCACCGGGACTCAGATTCTCCCCAGACG CCGAGGATGGCCGTCATGGCGCCCCGAACCCTCGTCCTGCTACTCTCGGGGGCCCTGGCCCTGACCCA GACCTGGGCAGGTGAGTGCGGGGTCGGGAGGGAAACGGCCTCTGCGGGGAGAAGCAAGGGGCCCGCCT GGCGGGGGCGCAAGACCCGGGAAGCCGCGCCGGGAGGAGGGTCGGGCGGGTCTCAGCCACTCCTCGTC CCCAGGCTCCCACTCCATGAGGTATTTCTCCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCT TCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGG ATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACGAGGAGACAGGGAAAGT GAAGGCCCACTCACAGACTGACCGAGAGAACCTGCGGATCGCGCTCCGCTACTACAACCAGAGCGAGG CCGGTGAGTGACCCCGGCCCGGGGCGCAGGTCACGACCCCTCATCCCCCACGGACGGGCCGGGTCGCC CACAGTCTCCGGGTCCGAGATCCACCCCGAAGCCGCGGGACCCCGAGACCCTTGCCCCGGGAGAGGCC CAGGCGCCTTAACCCGGTTTCATTTTCAGTTTAGGCCAAAAATCCCCCCGGGTTGGTCGGGGCCGGGC GGGGCTCGGGGGACTGGGCTGACCGCGGGGTCGGGGCCAGGTTCTCACACCCTCCAGATGATGTTTGG CTGCGACGTGGGGTCGGACGGGCGCTTCCTCCGCGGGTACCACCAGTACGCCTACGACGGCAAGGATT ACATCGCCCTGAAAGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGC AAGTGGGAGGCGGCCCATGTGGCGGAGCAGCAGAGAGCCTACCTGGAGGGCACGTGCGTGGACGGGCT CCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGGGTACCAGGGGCCACGGGGCGCCTA CCTGATCGCCTGTAGGTCTCCCGGGCTGGCCTCCCACAAGGAGGGGAGACAATTGGGACCAACACTAG AATATCGCCCTCCCTCTGGTCCTGAGGGAGAGGAATCCTCCTGGGTTCCAGATCCTGTACCAGAGAGT GACTCTGAGGTTCCGCCCTGCTCTCTGACACAATTAAGGGATAAAATCTCTGACGGAATGACGGAAAG ACGATCCCTCGAATACTGATGACTGGTTCCCTTTGACACCGGCAGCAGCCTTGGGACCGTGACTTTTC CTCTCAGGCCTTGTTCTCTGCTTCACACTCAATGTGTGTGGGGGTCTGAGTCCAGCACTTCTGAGTCC CTCAGCCTCCACTCAGGTCAGGACCAGAAGTCGCTGTTCCCTCCTCAGGGAATAGAAGATTATCCCAG GTGCCTGTGTCCAGGCTGGTGTCTGGGTTCTGTGCTCTCTTCCCCATCCCGGGTGTCCTGTCCATTCT CAAGATGGCCACATGCATGCTGGTGGAGTGTCCCATGACAGATGCAAAATGCCTGAATTTTCTGACTC"
}