This page is part of the FHIR Specification (v1.2.0: STU 3 Draft). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions
GenomicSource
{ "resourceType": "StructureDefinition", "id": "geneticsGenomicSourceClass", "url": "http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass", "name": "GenomicSource", "status": "draft", "publisher": "Health Level Seven International (Clinical Genomics)", "contact": [ { "telecom": [ { "system": "other", "value": "http://www.hl7.org/Special/committees/clingenomics" } ] } ], "date": "2015-03-18", "description": "Genomic source class means category of source of tissue sample used to determine the sequence. Here is the loinc answer List for Allelic state:1. Germline LA6683-2; 2. Somatic LA6684-0; 3. Prenatal LA6685-7; 4. Likely Germline LA18194-3; 5. Likely Somatic LA18195-0; 6. Likely Prenatal LA18196-8; 7. Unknown Genomic Origin LA18197-6.", "fhirVersion": "1.2.0", "mapping": [ { "identity": "v2", "uri": "http://hl7.org/v2", "name": "HL7 v2" }, { "identity": "rim", "uri": "http://hl7.org/v3", "name": "RIM" } ], "kind": "datatype", "constrainedType": "Extension", "abstract": false, "contextType": "resource", "context": [ "Observation" ], "base": "http://hl7.org/fhir/StructureDefinition/Extension", "snapshot": { "element": [ { "path": "Extension", "short": "GenomicSource", "definition": "Genomic source class means category of source of tissue sample used to determine the sequence. Here is the loinc answer List for Allelic state:1. Germline LA6683-2; 2. Somatic LA6684-0; 3. Prenatal LA6685-7; 4. Likely Germline LA18194-3; 5. Likely Somatic LA18195-0; 6. Likely Prenatal LA18196-8; 7. Unknown Genomic Origin LA18197-6.", "min": 0, "max": "1", "base": { "path": "Extension", "min": 0, "max": "*" }, "type": [ { "code": "Extension" } ], "mapping": [ { "identity": "v2", "map": "N/A" }, { "identity": "rim", "map": "N/A" } ] }, { "path": "Extension.id", "representation": [ "xmlAttr" ], "short": "xml:id (or equivalent in JSON)", "definition": "unique id for the element within a resource (for internal references).", "min": 0, "max": "1", "base": { "path": "Extension.id", "min": 0, "max": "1" }, "type": [ { "code": "id" } ], "mapping": [ { "identity": "rim", "map": "n/a" } ] }, { "path": "Extension.extension", "name": "extension", "short": "Extension", "definition": "An Extension", "min": 0, "max": "0", "base": { "path": "Extension.extension", "min": 0, "max": "*" }, "type": [ { "code": "Extension" } ] }, { "path": "Extension.url", "representation": [ "xmlAttr" ], "short": "identifies the meaning of the extension", "definition": "Source of the definition for the extension code - a logical name or a URL.", "comments": "The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition should be version specific. This will ideally be the URI for the Resource Profile defining the extension, with the code for the extension after a #.", "min": 1, "max": "1", "base": { "path": "Extension.url", "min": 1, "max": "1" }, "type": [ { "code": "uri" } ], "fixedUri": "http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass", "mapping": [ { "identity": "rim", "map": "N/A" } ] }, { "path": "Extension.valueCodeableConcept", "short": "Value of extension", "definition": "Value of extension - may be a resource or one of a constrained set of the data types (see Extensibility in the spec for list).", "min": 1, "max": "1", "base": { "path": "Extension.value[x]", "min": 0, "max": "1" }, "type": [ { "code": "CodeableConcept" } ], "mapping": [ { "identity": "rim", "map": "N/A" } ] } ] }, "differential": { "element": [ { "path": "Extension", "short": "GenomicSource", "definition": "Genomic source class means category of source of tissue sample used to determine the sequence. Here is the loinc answer List for Allelic state:1. Germline LA6683-2; 2. Somatic LA6684-0; 3. Prenatal LA6685-7; 4. Likely Germline LA18194-3; 5. Likely Somatic LA18195-0; 6. Likely Prenatal LA18196-8; 7. Unknown Genomic Origin LA18197-6.", "min": 0, "max": "1", "type": [ { "code": "Extension" } ], "mapping": [ { "identity": "v2", "map": "N/A" }, { "identity": "rim", "map": "N/A" } ] }, { "path": "Extension.extension", "name": "extension", "max": "0" }, { "path": "Extension.url", "type": [ { "code": "uri" } ], "fixedUri": "http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass" }, { "path": "Extension.value[x]", "min": 1, "type": [ { "code": "CodeableConcept" } ] } ] } }
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.