Connectathon 11 Snapshot

This page is part of the FHIR Specification (v1.2.0: STU 3 Draft). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

Extension: CIGAR

URL for this extension: 

http://hl7.org/fhir/StructureDefinition/geneticsCIGAR

Status: draft. Extension maintained by: Health Level Seven International (Clinical Genomics)

Extended CIGAR string for aligning the sequence with reference bases. See detailed documentation here.

Context of Use: Use on element: Observation

usage info: insert a list of places where this extension is used

Extension Content

Summary

NameFlagsCard.TypeDescription & Constraintsdoco
.. extension0..1stringURL = http://hl7.org/fhir/StructureDefinition/geneticsCIGAR
CIGAR: Extended CIGAR string for aligning the sequence with reference bases. See detailed documentation [here](http://support.illumina.com/help/SequencingAnalysisWorkflow/Content/Vault/Informatics/Sequencing_Analysis/CASAVA/swSEQ_mCA_ExtendedCIGARFormat.htm).
Use on element: Observation

doco Documentation for this format

Fulle Structure

NameFlagsCard.TypeDescription & Constraintsdoco
.. extension0..1ExtensionURL = http://hl7.org/fhir/StructureDefinition/geneticsCIGAR
CIGAR: Extended CIGAR string for aligning the sequence with reference bases. See detailed documentation [here](http://support.illumina.com/help/SequencingAnalysisWorkflow/Content/Vault/Informatics/Sequencing_Analysis/CASAVA/swSEQ_mCA_ExtendedCIGARFormat.htm).
Use on element: Observation
... extension 0..0
... url 1..1uri"http://hl7.org/fhir/StructureDefinition/geneticsCIGAR"
... valueString 1..1stringValue of extension

doco Documentation for this format

XML Template

<!-- CIGAR -->doco

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/geneticsCIGAR" >
  <!-- from Element: extension -->
 <valueString value="[string]"/><!-- 1..1 Value of extension -->
</extension>

JSON Template

{ // CIGAR
  // from Element: extension
    "url" : "http://hl7.org/fhir/StructureDefinition/geneticsCIGAR", // R! 
    "valueString" : "<string>" // R! Value of extension
  }

Summary

NameFlagsCard.TypeDescription & Constraintsdoco
.. extension0..1stringURL = http://hl7.org/fhir/StructureDefinition/geneticsCIGAR
CIGAR: Extended CIGAR string for aligning the sequence with reference bases. See detailed documentation [here](http://support.illumina.com/help/SequencingAnalysisWorkflow/Content/Vault/Informatics/Sequencing_Analysis/CASAVA/swSEQ_mCA_ExtendedCIGARFormat.htm).
Use on element: Observation

doco Documentation for this format

Full Structure

NameFlagsCard.TypeDescription & Constraintsdoco
.. extension0..1ExtensionURL = http://hl7.org/fhir/StructureDefinition/geneticsCIGAR
CIGAR: Extended CIGAR string for aligning the sequence with reference bases. See detailed documentation [here](http://support.illumina.com/help/SequencingAnalysisWorkflow/Content/Vault/Informatics/Sequencing_Analysis/CASAVA/swSEQ_mCA_ExtendedCIGARFormat.htm).
Use on element: Observation
... extension 0..0
... url 1..1uri"http://hl7.org/fhir/StructureDefinition/geneticsCIGAR"
... valueString 1..1stringValue of extension

doco Documentation for this format

XML Template

<!-- CIGAR -->doco

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/geneticsCIGAR" >
  <!-- from Element: extension -->
 <valueString value="[string]"/><!-- 1..1 Value of extension -->
</extension>

JSON Template

{ // CIGAR
  // from Element: extension
    "url" : "http://hl7.org/fhir/StructureDefinition/geneticsCIGAR", // R! 
    "valueString" : "<string>" // R! Value of extension
  }