Connectathon 11 Snapshot

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Conceptmap-example-specimen-type

This is the narrative for the resource. See also the XML or JSON format.

Specimen mapping from v2 table 0487 to SNOMED CT (http://hl7.org/fhir/ConceptMap/102)

Mapping from http://hl7.org/fhir/ValueSet/v2-0487 to SNOMED-CT

DRAFT. Published on 25/07/2013 by FHIR project team (original source: LabMCoP) (http://hl7.org/fhir; , http://www.phconnect.org/group...; ).


Source ConceptEquivalenceDestination ConceptComments
Code [http://hl7.org/fhir/v2/0487]Code [http://snomed.info/sct]v2 SPM-7 [http://snomed.info/sct]v2 SPM-8 [http://snomed.info/sct]v2 SPM-5 [http://snomed.info/sct]
ACNE (Tissue, Acne)EQUIVALENT309068002
ACNFLD (Fluid, Acne)EQUIVALENT11932300847002008HL7 term is a historical term. mapped to Pus
AIRS (Air Sample)EQUIVALENT446302006
ALL (Allograft)EQUIVALENT1193760037970006
AMP (Amputation)EQUIVALENT40865400381723002
ANGI (Catheter Tip, Angio)EQUIVALENT119312009TBD in detail
ARTC (Catheter Tip, Arterial)EQUIVALENT119312009TBD in detail
ASERU (Serum, Acute)UNMATCHEDpending
ASP (Aspirate)EQUIVALENT11929500814766002
ATTE (Environment, Attest)UNMATCHEDTBD
AUTOC (Environmental, Autoclave Capsule)UNMATCHEDTBD
AUTP (Autopsy)UNMATCHEDThis really is not a specimen per se - it is the state of the subject from whom the specimen is collected, so it should be used as a specimen type modifier ONLY!. Often this is indicated with a special medical record number or other notation on the patient. needs to have specimen type (SPM-4) and source site (SPM.8) and spatial orientation (SPM.9)
BBL (Blood bag)EQUIVALENT119304001
BCYST (Cyst, Baker's)UNMATCHED32361000submitted (PLR155) with parent of 167874004^knee joint synovial fluid (specimen), with specimen source topography 32361000^Popliteal fossa structure (body structure)
BITE (Bite)UNMATCHEDSubmit for new term with parent 119365002
BLEB (Bleb)EQUIVALENT309049000339008
BLIST (Blister)EQUIVALENT309049000339008
BOIL (Boil)EQUIVALENT1192950081476600259843005
BON (Bone)EQUIVALENT430268003
BOWL (Bowel contents)UNMATCHEDDon't use this term for human samples - use Stool instead. animal would use small intestinal contents, large intestinal contents
BPU (Blood product unit)EQUIVALENT119300005
BRN (Burn)EQUIVALENT119367005
BRSH (Brush)EQUIVALENT258415003439336003
BRTH (Breath (use EXHLD))EQUIVALENT119336008
BRUS (Brushing)EQUIVALENT30917600280657008
BUB (Bubo)EQUIVALENT3027950021476600211585000
BULLA (Bulla/Bullae)EQUIVALENT258482009339008
BX (Biopsy)EQUIVALENT25841500386273004
CALC (Calculus (=Stone))EQUIVALENT119350003
CARBU (Carbuncle)EQUIVALENT30905100141570003
CAT (Catheter)EQUIVALENT119311002
CBITE (Bite, Cat)UNMATCHEDSubmit for new term with parent 119365002
CLIPP (Clippings)EQUIVALENT119327009Be more specific use either: 119326000^hair specimen or 119327009^nail specimen
CNJT (Conjunctiva)EQUIVALENT119401005
CNJT (Conjunctiva)EQUIVALENT128160006
CNJT (Conjunctiva)EQUIVALENT258498002
COL (Colostrum)EQUIVALENT119329007
CONE (Biospy, Cone)EQUIVALENT3997130085453500971252005
CSCR (Scratch, Cat)UNMATCHEDsubmit for new term with parent 119365002^Specimen from wound (specimen)
CSERU (Serum, Convalescent)UNMATCHEDpending
CSITE (Catheter Insertion Site)EQUIVALENT258507003285570007386144009Prefer to have aspirate of the pus oozing out from cleaned insertion site - if swab is all that can be obtained, then swab after cleaning, otherwise you may get a contaminated specimen and a falsely identified infected central line. Do not just swab the reddened area - that will just collect skin flora
CSMY (Fluid, Cystostomy Tube)EQUIVALENT309051001
CST (Fluid, Cyst)EQUIVALENT258453008
CSVR (Blood, Cell Saver)UNMATCHEDTBD - may use blood and SPM-6
CTP (Catheter tip)EQUIVALENT119312009TBD in detail
CVPS (Site, CVP)EQUIVALENT258507003
CVPT (Catheter Tip, CVP)EQUIVALENT119312009445085009TBD in detail
CYN (Nodule, Cystic)EQUIVALENT11936800027925004
CYST (Cyst)EQUIVALENT119368000
DBITE (Bite, Dog)UNMATCHEDSubmit for new term with parent 119365002
DCS (Sputum, Deep Cough)EQUIVALENT119335007
DEC (Ulcer, Decubitus)EQUIVALENT258505006
DEION (Environmental, Water (Deionized))UNMATCHEDTBD
DIA (Dialysate)EQUIVALENT119360007
DISCHG (Discharge)EQUIVALENT258439008
DIV (Diverticulum)EQUIVALENT11937600331113003
DRN (Drain)EQUIVALENT119306004
DRNG (Drainage, Tube)EQUIVALENT258455001122462000Historical term - consider what is being drained and indicate that in SPM-4 instead: not an acceptable specimen for micro - not specific enough term
DRNGP (Drainage, Penrose)EQUIVALENT309051001122462000Historical term - consider what is being drained and indicate that in SPM-4 instead
EARW (Ear wax (cerumen))EQUIVALENT122580007
EBRUSH (Brush, Esophageal)EQUIVALENT3092100093621300732849002
EEYE (Environmental, Eye Wash)UNMATCHEDTBD
EFF (Environmental, Effluent)UNMATCHEDTBD
EFFUS (Effusion)EQUIVALENT258440005
EFOD (Environmental, Food)EQUIVALENT119320006
EISO (Environmental, Isolette)EQUIVALENT258536003
ELT (Electrode)EQUIVALENT119314005
ENVIR (Environmental, Unidentified Substance)EQUIVALENT119324002
EOTH (Environmental, Other Substance)UNMATCHEDTBD
ESOI (Environmental, Soil)UNMATCHEDTBD
ESOS (Environmental, Solution (Sterile))UNMATCHEDTBD
ETA (Aspirate, Endotrach)EQUIVALENT11930700814766002321667001
ETTP (Catheter Tip, Endotracheal)EQUIVALENT119312009TBD in detail
ETTUB (Tube, Endotracheal)EQUIVALENT11930700814766002321667001
EWHI (Environmental, Whirlpool)UNMATCHEDTBD
EXG (Gas, exhaled (=breath))EQUIVALENT119336008
EXS (Shunt, External)UNMATCHEDTBD
EXUDTE (Exudate)EQUIVALENT258441009
FAW (Environmental, Water (Well))UNMATCHEDTBD
FBLOOD (Blood, Fetal)EQUIVALENT119297000303112003
FGA (Fluid, Abdomen)EQUIVALENT16813900183670000
FIST (Fistula)EQUIVALENT119370009
FLD (Fluid, Other)EQUIVALENT309051001
FLT (Filter)UNMATCHEDTBD
FLU (Fluid, Body unsp)EQUIVALENT309051001
FLUID (Fluid)EQUIVALENT258442002
FOLEY (Catheter Tip, Foley)EQUIVALENT119312009TBD in detail
FRS (Fluid, Respiratory)EQUIVALENT258442002272626006this term is not specific enough, choose from terms that more accurately describe the specimen
FSCLP (Scalp, Fetal)EQUIVALENT30950200741695006
FUR (Furuncle)EQUIVALENT11929500859843005Further describe the sample as tissue or pus. or by the collection method. The term boil is not specifc to a body site - need to indicate source site (spm.8). preferred term is Aspirate_Boil
GAS (Gas)EQUIVALENT119317003
GASA (Aspirate, Gastric)EQUIVALENT1681370041476600269695003
GASAN (Antrum, Gastric)EQUIVALENT11937900566051006
GASBR (Brushing, Gastric)EQUIVALENT30921300623515700969695003
GASD (Drainage, Gastric)EQUIVALENT25845900712246200069695003Historical term - consider what is being drained and indicate that in SPM-4 instead
GAST (Fluid/contents, Gastric)EQUIVALENT258459007
GENV (Genital vaginal)EQUIVALENT119394009
GRAFT (Graft)EQUIVALENT440493002
GRANU (Granuloma)EQUIVALENT11937600345647009
GROSH (Catheter, Groshong)EQUIVALENT119311002TBD in detail
GSOL (Solution, Gastrostomy)UNMATCHEDTBD
GSPEC (Biopsy, Gastric)EQUIVALENT3092110087912100369695003
GT (Tube, Gastric)UNMATCHEDTBD
GTUBE (Drainage Tube, Drainage (Gastrostomy))EQUIVALENT25845900712246200069695003127490009Historical term - consider what is being drained and indicate that in SPM-4 instead
HBITE (Bite, Human)UNMATCHEDSubmit for new term with parent 119365002
HBLUD (Blood, Autopsy)EQUIVALENT119297000303113008
HEMAQ (Catheter Tip, Hemaquit)EQUIVALENT119312009TBD in detail
HEMO (Catheter Tip, Hemovac)EQUIVALENT119312009TBD in detail
HERNI (Tissue, Herniated)EQUIVALENT119376003
HEV (Drain, Hemovac)EQUIVALENT119306004
HIC (Catheter, Hickman)EQUIVALENT119312009445085009TBD in detail
HYDC (Fluid, Hydrocele)EQUIVALENT30905100155434001
IBITE (Bite, Insect)UNMATCHEDSubmit for new term with parent 119365002
ICYST (Cyst, Inclusion)EQUIVALENT309075001
IDC (Catheter Tip, Indwelling)EQUIVALENT119312009TBD in detail
IHG (Gas, Inhaled)EQUIVALENT119337004
ILEO (Drainage, Ileostomy)EQUIVALENT258455001419954003Historical term - consider what is being drained and indicate that in SPM-4 instead: stool is what is expected, should use stool sample
ILLEG (Source of Specimen Is Illigible)UNMATCHEDTBD
IMP (Implant)EQUIVALENT439961009
INCI (Site, Incision/Surgical)EQUIVALENT438660002
INFIL (Infiltrate)UNMATCHEDThis describes a morphologic abnormality, not a sample
INS (Insect)EQUIVALENT258614005
INTRD (Catheter Tip, Introducer)EQUIVALENT119312009TBD in detail
IT (Intubation tube)EQUIVALENT119307008
IUD (Intrauterine Device)UNMATCHEDpending
IVCAT (Catheter Tip, IV)EQUIVALENT119312009255560000TBD in detail
IVFLD (Fluid, IV)EQUIVALENT258649003
IVTIP (Tubing Tip, IV)EQUIVALENT119312009
JEJU (Drainage, Jejunal)EQUIVALENT25846300012246200021306003Historical term - consider what is being drained and indicate that in SPM-4 instead: stool is what is expected, should use stool sample
JNTFLD (Fluid, Joint)EQUIVALENT119332005
JP (Drainage, Jackson Pratt)EQUIVALENT309051001122462000Historical term - consider what is being drained and indicate that in SPM-4 instead
KELOI (Lavage)EQUIVALENT44067400867889009
KIDFLD (Fluid, Kidney)EQUIVALENT30905100164033007
LAVG (Lavage, Bronhial)EQUIVALENT258607008397394009
LAVGG (Lavage, Gastric)EQUIVALENT16813800917383000369695003
LAVGP (Lavage, Peritoneal)EQUIVALENT440137008
LAVPG (Lavage, Pre-Bronch)EQUIVALENT4406740086788900944567001
LENS1 (Contact Lens)EQUIVALENT440473005
LENS2 (Contact Lens Case)UNMATCHEDTBD
LESN (Lesion)EQUIVALENT309049000should be more specific what kind of lesion is observed - be more specific is it a wound, abscess, mass - specify! Ask SNOMED CT to mark it as a grouper term only (309049000)
LIQ (Liquid, Unspecified)EQUIVALENT258442002
LIQO (Liquid, Other)UNMATCHEDTBD
LSAC (Fluid, Lumbar Sac)EQUIVALENT258450006303949008The HL7 term is a historical term Mapped to CSF obtained by lumbar puncture
MAHUR (Catheter Tip, Makurkour)EQUIVALENT119312009TBD in detail
MASS (Mass)EQUIVALENT4205480044147007
MBLD (Blood, Menstrual)EQUIVALENT119345009
MUCOS (Mucosa)EQUIVALENT119376003414781009
MUCUS (Mucus)EQUIVALENT258483004
NASDR (Drainage, Nasal)EQUIVALENT2584740091224620002095001Historical term - consider what is being drained and indicate that in SPM-4 instead
NEDL (Needle)UNMATCHEDTBD
NEPH (Site, Nephrostomy)EQUIVALENT438660002
NGASP (Aspirate, Nasogastric)EQUIVALENT302794003685300869695003
NGAST (Drainage, Nasogastric)EQUIVALENT25845900712246200069695003127492001Historical term - consider what is being drained and indicate that in SPM-4 instead
NGS (Site, Naso/Gastric)EQUIVALENT438660002
NODUL (Nodule(s))UNMATCHEDpending
NSECR (Secretion, Nasal)EQUIVALENT168141000
ORH (Other)EQUIVALENT123038009
ORL (Lesion, Oral)UNMATCHED74262004be more precise use ulcer, tumor, vesicle
OTH (Source, Other)EQUIVALENT123038009
PACEM (Pacemaker)UNMATCHEDTBD
PCFL (Fluid, Pericardial)EQUIVALENT122571007
PDSIT (Site, Peritoneal Dialysis)EQUIVALENT438660002
PDTS (Site, Peritoneal Dialysis Tunnel)UNMATCHEDsubmitted for code
PELVA (Abscess, Pelvic)EQUIVALENT11937100812921003
PENIL (Lesion, Penile)UNMATCHED18911002need to know what kind of lesion, so map to: UlcerTissue_penile, VesicleFluid_penile, Wound_penile, Mass tissue_penile, Necrotic tissue_penile, AbscessAspirate_penile, Anything else?
PERIA (Abscess, Perianal)EQUIVALENT119371008397158004
PILOC (Cyst, Pilonidal)EQUIVALENT119368000
PINS (Site, Pin)EQUIVALENT438660002
PIS (Site, Pacemaker Insetion)EQUIVALENT258507003
PLAN (Plant Material)EQUIVALENT119301009
PLAS (Plasma)EQUIVALENT119361006
PLB (Plasma bag)EQUIVALENT119305000
PLEVS (Serum, Peak Level)EQUIVALENT119364003255587001
PND (Drainage, Penile)EQUIVALENT25843900812246200013648007Historical term -though in this case more often used for discharge
POL (Polyps)EQUIVALENT11937600341329004
POPGS (Graft Site, Popliteal)EQUIVALENT4404930026902008
POPLG (Graft, Popliteal)EQUIVALENT4404930026902008
POPLV (Site, Popliteal Vein)UNMATCHEDTBD
PORTA (Catheter, Porta)EQUIVALENT119311002TBD in detail
PPP (Plasma, Platelet poor)EQUIVALENT119362004
PROST (Prosthetic Device)EQUIVALENT438660002
PRP (Plasma, Platelet rich)EQUIVALENT119363009
PSC (Pseudocyst)EQUIVALENT119368000
PUNCT (Wound, Puncture)EQUIVALENT119365002129300006
PUS (Pus)EQUIVALENT119323008
PUSFR (Pustule)EQUIVALENT11932300847002008
PUST (Pus)EQUIVALENT11932300847002008
QC3 (Quality Control)UNMATCHEDTBD
RANDU (Urine, Random)EQUIVALENT278020009
RBITE (Bite, Reptile)UNMATCHEDSubmit for new term with parent: 119365002
RECT (Drainage, Rectal)EQUIVALENT11933900112246200034402009Historical term - consider what is being drained and indicate that in SPM-4 instead: stool is what is expected, should use stool sample
RECTA (Abscess, Rectal)EQUIVALENT11937100834402009
RENALC (Cyst, Renal)EQUIVALENT25842000364033007
RENC (Fluid, Renal Cyst)EQUIVALENT25845300864033007
RES (Respiratory)EQUIVALENT258603007
SAL (Saliva)EQUIVALENT119342007
SCAR (Tissue, Keloid (Scar))EQUIVALENT119376003
SCLV (Catheter Tip, Subclavian)EQUIVALENT1193120099454009TBD in detail
SCROA (Abscess, Scrotal)EQUIVALENT11937100820233005
SECRE (Secretion(s))EQUIVALENT432825001
SER (Serum)EQUIVALENT119364003
SHU (Site, Shunt)EQUIVALENT11929500814766002257351008Preferred is aspiration with sterile syringe from inflamed area. Specify body location of shunt site
SHUNF (Fluid, Shunt)EQUIVALENT446861007446860008279107003
SHUNT (Shunt)UNMATCHEDTBD
SITE (Site)UNMATCHEDTBD
SKBP (Biopsy, Skin)EQUIVALENT309066003240977001
SKN (Skin)EQUIVALENT119325001
SMM (Mass, Sub-Mandibular)EQUIVALENT4205480044147007
SNV (Fluid, synovial (Joint fluid))EQUIVALENT119332005
SPRM (Spermatozoa)EQUIVALENT119349003
SPRP (Catheter Tip, Suprapubic)EQUIVALENT119312009TBD in detail
SPRPB (Cathether Tip, Suprapubic)EQUIVALENT119312009TBD in detail
SPS (Environmental, Spore Strip)UNMATCHEDTBD
SPT (Sputum)EQUIVALENT119334006
SPTC (Sputum - coughed)EQUIVALENT119335007
SPTT (Sputum - tracheal aspirate)EQUIVALENT258609006
SPUT1 (Sputum, Simulated)UNMATCHEDTBD
SPUTIN (Sputum, Inducted)EQUIVALENT258610001
SPUTSP (Sputum, Spontaneous)EQUIVALENT119335007
STER (Environmental, Sterrad)UNMATCHEDTBD
STL (Stool = Fecal)EQUIVALENT119339001
STONE (Stone, Kidney)EQUIVALENT11935000364033007
SUBMA (Abscess, Submandibular)EQUIVALENT1193710085713008
SUBMX (Abscess, Submaxillary)EQUIVALENT1193710084335006
SUMP (Drainage, Sump)EQUIVALENT446562005122462000Historical term - consider what is being drained and indicate that in SPM-4 instead
SUP (Suprapubic Tap)EQUIVALENT12257500358088002
SUTUR (Suture)UNMATCHEDTBD
SWGZ (Catheter Tip, Swan Gantz)EQUIVALENT119312009TBD in detail
TASP (Aspirate, Tracheal)EQUIVALENT12287700012911200144567001
TISS (Tissue)EQUIVALENT119376003
TISU (Tissue ulcer)EQUIVALENT122593002
TLC (Cathether Tip, Triple Lumen)EQUIVALENT119312009TBD in detail
TRAC (Site, Tracheostomy)EQUIVALENT438660002
TRANS (Transudate)EQUIVALENT258538002
TSERU (Serum, Trough)EQUIVALENT119364003255588006
TSTES (Abscess, Testicular)EQUIVALENT119371008279572002
TTRA (Aspirate, Transtracheal)EQUIVALENT258480001129112001
TUBES (Tubes)EQUIVALENT119310001
TUMOR (Tumor)EQUIVALENT258435002
TZANC (Smear, Tzanck)UNMATCHEDThis is the name of a lab test. A skin sample is examined for viral inclusions.
UDENT (Source, Unidentified)EQUIVALENT123038009
UR (Urine)EQUIVALENT122575003
URC (Urine clean catch)EQUIVALENT122880004
URINB (Urine, Bladder Washings)EQUIVALENT12257500378533007
URINC (Urine, Catheterized)EQUIVALENT446846006
URINM (Urine, Midstream)EQUIVALENT258574006225271002431938005
URINN (Urine, Nephrostomy)EQUIVALENT44627700322510900525990002
URINP (Urine, Pedibag)UNMATCHEDTBD
URT (Urine catheter)EQUIVALENT122565001
USCOP (Urine, Cystoscopy)UNMATCHED17617800689837001NEW specimenTERM 7
USPEC (Source, Unspecified)EQUIVALENT123038009
VASTIP (Catheter Tip, Vas)EQUIVALENT119312009TBD in detail
VENT (Catheter Tip, Ventricular)EQUIVALENT119312009TBD in detail
VITF (Vitreous Fluid)EQUIVALENT258438000
VOM (Vomitus)EQUIVALENT122572000
WASH (Wash)EQUIVALENT440674008
WASI (Washing, e.g. bronchial washing)EQUIVALENT122609004
WAT (Water)EQUIVALENT119318008
WB (Blood, Whole)UNMATCHEDBloodbanking term ONLY now map to blood and the respective preservative
WEN (Wen)EQUIVALENT309075001
WICK (Wick)UNMATCHEDTBD
WND (Wound)EQUIVALENT119365002
WNDA (Wound abscess)EQUIVALENT119366001
WNDD (Wound drainage)EQUIVALENT122566000122462000
WNDE (Wound exudate)EQUIVALENT122568004
WORM (Worm)EQUIVALENT258618008
WRT (Wart)EQUIVALENT309068002
WWA (Environmental, Water)EQUIVALENT119318008
WWO (Environmental, Water (Ocean))UNMATCHEDTBD
WWT (Environmental, Water (Tap))UNMATCHEDTBD
CSITE (Catheter Insertion Site)UNMATCHED38614400914766002119295008Prefer to have aspirate of the pus oozing out from cleaned insertion site - if swab is all that can be obtained, then swab after cleaning, otherwise you may get a contaminated specimen and a falsely identified infected central line. Do not just swab the reddened area - that will just collect skin flora
CLIPP (Clippings)UNMATCHED119326000Be more specific use either: 119326000^hair specimen, or 119327009^nail specimen
SHU (Site, Shunt)UNMATCHED257351008438660002assume swab from shunt site for mapping here - clean surface of skin prior to expressing the shunt site - preferred is aspiration with sterile syringe should use SPM.8 to specify body approximate match location of shunt site

 

 

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.