DSTU2 Ballot Source

This page is part of the FHIR Specification (v0.5.0: DSTU 2 Ballot 2). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

Extension CIGAR - Definition

URL for this extension:

http://hl7.org/fhir/StructureDefinition/geneticsCIGAR

Status: draft. Extension maintained by: Health Level Seven, Intl - Clinical Genomics

A sequence of of base lengths and the associated operation, used to indicate which bases align (either a match/mismatch) with the reference, are deleted from the reference, and are insertions that are not in the reference. string of observed nucleotides. Observed nucleotides matching the reference are in capital letters. Observed nucleotides not matching the reference are in lower case letters. Use '-' a dash for deleted/missing nucleotides in the observed sequence. Allowable characters are A,T,C,G, a,t,c,g and -.

Context of Use: Use on element: Observation

usage info: insert a list of places where this extension is used

Structure

Name	Card.	Type	Description & Constraints
extension		Extension	URL = http://hl7.org/fhir/StructureDefinition/geneticsCIGAR CIGAR: A sequence of of base lengths and the associated operation, used to indicate which bases align (either a match/mismatch) with the reference, are deleted from the reference, and are insertions that are not in the reference. string of observed nucleotides. Observed nucleotides matching the reference are in capital letters. Observed nucleotides not matching the reference are in lower case letters. Use '-' a dash for deleted/missing nucleotides in the observed sequence. Allowable characters are A,T,C,G, a,t,c,g and -. Use on element: Observation
extension	0..*	Extension	Additional Content defined by implementations
url	1..1	uri	identifies the meaning of the extension Fixed Value: http://hl7.org/fhir/StructureDefinition/geneticsCIGAR
valueString	0..1	string	Value of extension

XML Template

<!-- CIGAR -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/geneticsCIGAR" >
  <!-- from Element: extension -->
 <valueString  value="[string]"/><!-- 0..1 Value of extension
</extension>

JSON Template

{ // CIGAR
  // from Element: extension
    "url" : "http://hl7.org/fhir/StructureDefinition/geneticsCIGAR", // R! 
    "valueString" : "<string>" //Value of extension
  }

Structure

Name	Card.	Type	Description & Constraints
extension		Extension	URL = http://hl7.org/fhir/StructureDefinition/geneticsCIGAR CIGAR: A sequence of of base lengths and the associated operation, used to indicate which bases align (either a match/mismatch) with the reference, are deleted from the reference, and are insertions that are not in the reference. string of observed nucleotides. Observed nucleotides matching the reference are in capital letters. Observed nucleotides not matching the reference are in lower case letters. Use '-' a dash for deleted/missing nucleotides in the observed sequence. Allowable characters are A,T,C,G, a,t,c,g and -. Use on element: Observation
extension	0..*	Extension	Additional Content defined by implementations
url	1..1	uri	identifies the meaning of the extension Fixed Value: http://hl7.org/fhir/StructureDefinition/geneticsCIGAR
valueString	0..1	string	Value of extension

XML Template

<!-- CIGAR -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/geneticsCIGAR" >
  <!-- from Element: extension -->
 <valueString  value="[string]"/><!-- 0..1 Value of extension
</extension>

JSON Template

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