2nd DSTU Draft For Comment

This page is part of the FHIR Specification (v0.4.0: DSTU 2 Draft). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

Extension Genomic source of the variant - Definition

URL for this extension: 

http://hl7.org/fhir/ProfilegeneticsGenomicSourceClass

Status: draft

The genomic class of the variant: Germline for inherited genome, somatic for cancer genome (e.g. DNA from tumor cells), and prenatal for fetal genome. Associated with LOINC answer list: 48002-0.

Mollie Ullman-Cullere

usage info: todo

Extension Content

Structure

NameFlagsCard.TypeDescription & Constraintsdoco
.. extensionExtensionURL = http://hl7.org/fhir/ProfilegeneticsGenomicSourceClass
Genomic source of the variant: The genomic class of the variant: Germline for inherited genome, somatic for cancer genome (e.g. DNA from tumor cells), and prenatal for fetal genome. Associated with LOINC answer list: 48002-0.
Use on element: Observation
..valueString 0..1stringGenomic source of the variant
Use on element: Observation

XML Template

<!-- Genomic source of the variant -->doco

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/ProfilegeneticsGenomicSourceClass" >
 <!-- from Element: extension -->
 <valueString value="[string]"/>
</extension>

JSON Template

// extension added to existing objectdoco

  "http://hl7.org/fhir/ProfilegeneticsGenomicSourceClass" : { // Genomic source of the variant
    "valueString" : ["<string>"] //Genomic source of the variant
  }

Structure

NameFlagsCard.TypeDescription & Constraintsdoco
.. extensionExtensionURL = http://hl7.org/fhir/ProfilegeneticsGenomicSourceClass
Genomic source of the variant: The genomic class of the variant: Germline for inherited genome, somatic for cancer genome (e.g. DNA from tumor cells), and prenatal for fetal genome. Associated with LOINC answer list: 48002-0.
Use on element: Observation
..valueString 0..1stringGenomic source of the variant
Use on element: Observation

XML Template

<!-- Genomic source of the variant -->doco

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/ProfilegeneticsGenomicSourceClass" >
 <!-- from Element: extension -->
 <valueString value="[string]"/>
</extension>

JSON Template

to do