GAO Ballot Package

This page is part of the FHIR Specification (v1.1.0: STU 3 Ballot 1). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

This is a frozen snapshot of the FHIR specification created for the purpose of balloting the GAO implementation Guide. It includes draft changes that may be part of the future DSTU 2.1 release but further change is expected. Readers should focus solely on the GAO implementation content, and FHIR DSTU 2 for other purposes.

Extension: ReadCoverage

URL for this extension:

http://hl7.org/fhir/StructureDefinition/geneticsReadCoverage

Status: draft. Extension maintained by: Health Level Seven International (Clinical Genomics)

Coverage (read depth or depth) is the average number of reads representing a given nucleotide in the reconstructed sequence.

Context of Use: Use on element: Observation

usage info: insert a list of places where this extension is used

Summary

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	integer	URL = http://hl7.org/fhir/StructureDefinition/geneticsReadCoverage ReadCoverage: Coverage (read depth or depth) is the average number of reads representing a given nucleotide in the reconstructed sequence. Use on element: Observation
Documentation for this format

Fulle Structure

Name	Card.	Type	Description & Constraints
extension	0..1	Extension	URL = http://hl7.org/fhir/StructureDefinition/geneticsReadCoverage ReadCoverage: Coverage (read depth or depth) is the average number of reads representing a given nucleotide in the reconstructed sequence. Use on element: Observation
extension	0..0
url	1..1	uri	"http://hl7.org/fhir/StructureDefinition/geneticsReadCoverage"
valueInteger	1..1	integer	Value of extension
Documentation for this format

XML Template

<!-- ReadCoverage -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/geneticsReadCoverage" >
  <!-- from Element: extension -->
 <valueInteger value="[integer]"/><!-- 1..1 Value of extension -->
</extension>

JSON Template

{ // ReadCoverage
  // from Element: extension
    "url" : "http://hl7.org/fhir/StructureDefinition/geneticsReadCoverage", // R! 
    "valueInteger" : <integer> // R! Value of extension
  }

Summary

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	integer	URL = http://hl7.org/fhir/StructureDefinition/geneticsReadCoverage ReadCoverage: Coverage (read depth or depth) is the average number of reads representing a given nucleotide in the reconstructed sequence. Use on element: Observation
Documentation for this format

Full Structure

Name	Card.	Type	Description & Constraints
extension	0..1	Extension	URL = http://hl7.org/fhir/StructureDefinition/geneticsReadCoverage ReadCoverage: Coverage (read depth or depth) is the average number of reads representing a given nucleotide in the reconstructed sequence. Use on element: Observation
extension	0..0
url	1..1	uri	"http://hl7.org/fhir/StructureDefinition/geneticsReadCoverage"
valueInteger	1..1	integer	Value of extension
Documentation for this format

XML Template

<!-- ReadCoverage -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/geneticsReadCoverage" >
  <!-- from Element: extension -->
 <valueInteger value="[integer]"/><!-- 1..1 Value of extension -->
</extension>

JSON Template

{ // ReadCoverage
  // from Element: extension
    "url" : "http://hl7.org/fhir/StructureDefinition/geneticsReadCoverage", // R! 
    "valueInteger" : <integer> // R! Value of extension
  }