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This is a frozen snapshot of the FHIR specification created for the purpose of balloting the GAO implementation Guide. It includes draft changes that may be part of the future DSTU 2.1 release but further change is expected. Readers should focus solely on the GAO implementation content, and FHIR DSTU 2 for other purposes.

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Extension: GenomicSource

URL for this extension:

http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass

Status: draft. Extension maintained by: Health Level Seven International (Clinical Genomics)

Genomic source class means category of source of tissue sample used to determine the sequence. Here is the loinc answer List for Allelic state:1. Germline LA6683-2; 2. Somatic LA6684-0; 3. Prenatal LA6685-7; 4. Likely Germline LA18194-3; 5. Likely Somatic LA18195-0; 6. Likely Prenatal LA18196-8; 7. Unknown Genomic Origin LA18197-6.

Context of Use: Use on element: Observation

usage info: insert a list of places where this extension is used

Extension Content

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Summary

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	CodeableConcept	URL = http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass GenomicSource: Genomic source class means category of source of tissue sample used to determine the sequence. Here is the loinc answer List for Allelic state:1. Germline LA6683-2; 2. Somatic LA6684-0; 3. Prenatal LA6685-7; 4. Likely Germline LA18194-3; 5. Likely Somatic LA18195-0; 6. Likely Prenatal LA18196-8; 7. Unknown Genomic Origin LA18197-6. Use on element: Observation
Documentation for this format

Fulle Structure

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	Extension	URL = http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass GenomicSource: Genomic source class means category of source of tissue sample used to determine the sequence. Here is the loinc answer List for Allelic state:1. Germline LA6683-2; 2. Somatic LA6684-0; 3. Prenatal LA6685-7; 4. Likely Germline LA18194-3; 5. Likely Somatic LA18195-0; 6. Likely Prenatal LA18196-8; 7. Unknown Genomic Origin LA18197-6. Use on element: Observation
extension		0..0
url		1..1	uri	"http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass"
valueCodeableConcept		1..1	CodeableConcept	Value of extension
Documentation for this format

XML Template

<!-- GenomicSource -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass" >
  <!-- from Element: extension -->
 <valueCodeableConcept><!-- 1..1 CodeableConcept 
     Value of extension --></valueCodeableConcept>
</extension>

JSON Template

{ // GenomicSource
  // from Element: extension
    "url" : "http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass", // R! 
    "valueCodeableConcept" : { CodeableConcept } // R! Value of extension
  }

Summary

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	CodeableConcept	URL = http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass GenomicSource: Genomic source class means category of source of tissue sample used to determine the sequence. Here is the loinc answer List for Allelic state:1. Germline LA6683-2; 2. Somatic LA6684-0; 3. Prenatal LA6685-7; 4. Likely Germline LA18194-3; 5. Likely Somatic LA18195-0; 6. Likely Prenatal LA18196-8; 7. Unknown Genomic Origin LA18197-6. Use on element: Observation
Documentation for this format

Full Structure

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	Extension	URL = http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass GenomicSource: Genomic source class means category of source of tissue sample used to determine the sequence. Here is the loinc answer List for Allelic state:1. Germline LA6683-2; 2. Somatic LA6684-0; 3. Prenatal LA6685-7; 4. Likely Germline LA18194-3; 5. Likely Somatic LA18195-0; 6. Likely Prenatal LA18196-8; 7. Unknown Genomic Origin LA18197-6. Use on element: Observation
extension		0..0
url		1..1	uri	"http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass"
valueCodeableConcept		1..1	CodeableConcept	Value of extension
Documentation for this format

XML Template

<!-- GenomicSource -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass" >
  <!-- from Element: extension -->
 <valueCodeableConcept><!-- 1..1 CodeableConcept 
     Value of extension --></valueCodeableConcept>
</extension>

JSON Template

{ // GenomicSource
  // from Element: extension
    "url" : "http://hl7.org/fhir/StructureDefinition/geneticsGenomicSourceClass", // R! 
    "valueCodeableConcept" : { CodeableConcept } // R! Value of extension
  }